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London Bioinformatics Frontiers Conference: “Standardising & scaling your analysis using Nextflow, Containers & Cloud”

London Bioinformatics Frontiers Conference: "Standardising & scaling your analysis using Nextflow, Containers & Cloud"

When

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Where

The Francis Crick Institute
1 Midland Road, London, England, NW1 1ST

Event Type

  • Member Submitted

Name: Claire-Alix Garin Zapata

Organisation: Lifebit Biotech

The London Bioinformatics Frontiers Conference

Register to attend : bioinformatics-frontiers.com

An exciting two-day event exploring how to apply Nextflow, Containers & Cloud in your bioinformatics analyses in order to standardise & scale them.

We bring together academic & industry experts in the genomics space to:

  1. Provide an in-depth look into how Nextflow based applications are currently fast-tracking research
  2. Showcase how containerisation can be used to build reproducible & modular pipelines
  3. Highlight the flexibility & scalability of cloud for big data analysis
  4. Showcase how to standardise Nextflow-based pipelines using software development best practices and containers
  5. Work towards standardising & scaling omics pipelines over cloud during our Hackathon (Day 2, pre-registration required). Hackathon participants can either bring in their own pipelines they want to dockerise or convert to Nextflow, or work with existing Nextflow-based pipelines they want to standardise using software development best practices and scale over cloud.

Speakers

  • Matthew Davies, Ervaxx Therapeutics, UK
  • Alain Coletta, GenePlaza, Belgium
  • Diogo Silva, Lifebit, UK
  • Matthieu Foll, International Agency for Research on Cancer – WHO, France
  • Giuliano Macciocci, eLIFE, UK
  • Anne Deslattes Mays, Jackson Laboratories, USA
  • Alessia Visconti, King’s College London, UK
  • Giovanni Marco Dall’Olio, GlaxoSmithKline, UK
  • Dan Greenfield, PetaGene, UK
  • Anton Khodak, Wellcome Sanger Institute, UK
  • Piotr Faba, Ardigen, Poland
  • Tony Wildish, EMBL-EBI, UK
  • Bruno Silva, The Francis Crick Institute, UK
  • Anthony Underwood, The Centre for Genomic Pathogen Surveillance, UK
  • Henry Ines, Shivom, USA
  • Joke Reumers, Janssen, Belgium
  • Adrianto Wirawan, AstraZeneca, UK
  • Pablo Prieto, Lifebit, UK

Agenda

Day 1: Talks from the experts (open to the public, registration required)

  • Enabling reproducible, modular analysis workflows with containerisation technology
  • Standardising Nextflow based pipelines using software development best practices & containers
  • From HPC to Cloud: Scaling your pipelines with Nextflow
  • Containerisation: best practices & examples from the frontlines
  • Learn how to assemble Nextflow pipelines quickly from modules with Flowcraft, a workflow assembling tool

Day 2: Hackathon (by application only)

  • Theme: Standardising your Nextflow based pipelines and scaling them over Cloud
  • Open to participants who have pipelines they would like to convert to Nextflow, or participants that have pipelines that they want to containerise or existing Nextflow-based pipelines that they want to standardise using software development best practices or scale over cloud.
  • Note: To participate in the hackathon, please apply here!

Register here: bioinformatics-frontiers.com 

Make sure to keep up with the London Bioinformatics Frontiers Conference on Twitter with #LBFrontiers.

Please contact us at hello@lifebit.ai if you have any questions about the event.

Posted on June 17, 2019 by event.submitter
Categories: Member Submitted


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